surface sediment metagenome

BioSample Accession(s)

SAMEA14490144, ERS12117583

geographic location (depth)

-0.02

ENA-CHECKLIST

ERC000021

environment (material)

shallow marine sediment [ENVO:03000034]

organism

marine sediment metagenome

collection date

2017-12-20

geographic location (longitude)

14.35

sediment environmental package

sediment

geographic location (latitude)

78.11

scientific_name

marine sediment metagenome

geographic location (elevation)

-8.84

investigation type

metagenome

ENA-FIRST-PUBLIC

2022-06-30

project name

PRJEB53193

sequencing method

Illumina HiSeq 2500

ENA-LAST-UPDATE

2022-06-30

environment (biome)

marine biome [ENVO:00000447]

environment (feature)

microbial feature [ENVO:01000007]

geographic location (country and/or sea)

Svalbard

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="ERX11430222" alias="ena-EXPERIMENT-TAB-14-09-2023-14:32:04:145-38754" center_name="MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY">
  <IDENTIFIERS>
    <PRIMARY_ID>ERX11430222</PRIMARY_ID>
    <SUBMITTER_ID namespace="MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY">ena-EXPERIMENT-TAB-14-09-2023-14:32:04:145-38754</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina HiSeq 2500 paired end sequencing</TITLE>
  <STUDY_REF accession="ERP137976">
    <IDENTIFIERS>
      <PRIMARY_ID>ERP137976</PRIMARY_ID>
      <SECONDARY_ID>PRJEB53193</SECONDARY_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="ERS12117583">
      <IDENTIFIERS>
        <PRIMARY_ID>ERS12117583</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMEA14490144</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME/>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>ERS12117583</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>ERA27216934</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX11430222&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX11430222&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>