Metadata retrieved
using the EBI API
This sample represents a manually-refined metagenome-assembled genome recovered a metagenome from an Illumina paired-end read metagenome of a surface seawater sample collected around Herschel Island, Canada. The metagenome sample and related assembly can be found under ERS16475404, ERR12120025
- BioSample Accession(s)
- SAMEA115135962, ERS17855561
- assembly software
- Megahit v1.2.9
- broad-scale environmental context
- marine biome [ENVO:00000447]
- collection date
- 2022-07-18
- sample derived from
- ERS16475404,ERR12120025
- geographic location (longitude)
- -138.9069
- binning parameters
- MetaWrap v1.3.2 was used with the following parameters: -m 200 -t 20 --metabat2 �maxbin2 �concoct �run-checkm ; Followed by MetaWrap bin_refinement with the following parameters: -c 50 -x 118
- contamination score
- 4.56
- ENA-FIRST-PUBLIC
- 2024-01-25
- ENA-LAST-UPDATE
- 2024-01-25
- completeness software
- CheckM v1.2
- geographic location (country and/or sea)
- Canada
- ENA-CHECKLIST
- ERC000047
- binning software
- MetaWrap v1.3.2
- organism
- uncultured Ilumatobacter sp.
- assembly quality
- Many fragments with little to no review of assembly other than reporting of standard assembly statistics
- taxonomic identity marker
- Multi-marker approach
- completeness score
- 90.51
- environmental medium
- sea water [ENVO:00002149]
- geographic location (latitude)
- 69.559
- scientific_name
- uncultured Ilumatobacter sp.
- investigation type
- metagenome
- local environmental context
- marine photic zone [ENVO:00000209]
- metagenomic source
- marine metagenome
- project name
- HER19_HER22_MetaG
- sequencing method
- Illumina NextSeq2000
- isolation_source
- sea water