Genome sc|0002342

Genomics

Accession

NCBI Assembly:SAMN42912234

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 99.61%
• Contamination: 1.82%
• Quality: 90.51

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Source

• BioSample: SAMN42912234

Other features

• G+C Content: 47.53%

Submitter comments

The genome assembly of Magnetominusculus dajiuhuensis is of high quality, as indicated by the completeness score of 99.61% and the low contamination rate of 1.82%. However, the assembly is somewhat fragmented, consisting of 218 contigs.

The presence of all key ribosomal RNA genes (1 copy each of 16S, 23S, and 5S rRNA genes) and a substantial number of coding sequences (3,368 CDS) indicates a functionally complete genome. The N50 value of 23,014 bp and the significant length of the largest contig (101,549 bp) also suggest that many parts of the genome are well-assembled.

Overall, the quality metrics confirm that the genome of Magnetominusculus dajiuhuensis is well-assembled and annotated, providing a valuable resource for further studies on this organism.

Automated checks

Failed: Cannot find ncbi:assembly:SAMN42912234

---

Last modified 26 days ago

Sample Metadata

BioSample entries

• BioSample: SAMN42912234

Date

Collection Date: 2019-08

Location

Lat Lon: 31.483503 N 110.000844 E

Toponym

Geo Loc Name: China: Dajiu Lake

Environment

Sample Type: metagenomic assembly

Isolation Source: sediment

Env Broad Scale: lake

Other

Depth: 0 to 0.3 m

Package

Ncbi Package: Microbe.1.0

All retrieved samples

• SAMN42912234: Microbe sample from Nitrospirota bacterium

---

Metadata retrieved about 1 month ago