SeqCode Registry
cognitis nomina
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Genomes
sc|0002348
JSON
Genome sc|0002348
Database
NCBI Assembly
Accession
GCA_041287165.1
Genomics
Accession
NCBI Assembly:
GCA_041287165.1
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
99.62%
(automated estimate: 99.1%)
Contamination:
0.38%
(automated estimate: 3.8%)
Quality:
97.72
(automated estimate: 80.1)
Ribosomal and transfer RNA genes
2 16S rRNAs (up to 61.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
230.0 ×
Source
SRA: SRR30017328
Other features
G+C Content:
66.8%
(automated estimate: 66.86%)
Coding Density:
92.35%
Codon Table:
11
N50:
463,965 bp
Contigs:
58
Largest Contig:
1,232,981 bp
Assembly Length:
6,071,023 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
4 months ago
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All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
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