Genome sc|0002356

Genomics

Accession

INSDC Nucleotide:GCA_964187635.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 94.2%
• Contamination: 0.0%
• Quality: 94.2

Ribosomal and transfer RNA genes

• 1 16S rRNA (unknown length)

Sequencing depth

8.1 ×

Source

• BioSample: SAMEA115720234

Other features

• G+C Content: 42.6%

Submitter comments

•  The GC content was assessed using anvio-8
•  Completeness and redundancy values were determined using checkM v1.1.3
•  The presence of tRNA elements was assessed using prokka v1.14.6
•  The presence of rRNA fragments was assessed using prokka v1.14.6 and barrnap v0.9
•  The sequencing depth of the MAG was assessed using samtools v1.17. Readmapping of the MAG was conducted against the metagenome from which it was recovered, and depth was determined using samtools coverage. The reported "mean depth" per contig was then averaged to get the depth of the entire MAG

Automated checks

Failed: Cannot find ncbi:nuccore:GCA_964187635.1

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Last modified 4 months ago

Sample Metadata

BioSample entries

• BioSample: SAMEA115720234

Date

Collection Date: 2016-03-31

Location

Geographic Location Latitude: 54.18

Geographic Location Longitude: 7.90

Toponym

Geographic Location Country And Or Sea: North Sea

Environment

Broad Scale Environmental Context: marine biome

Local Environmental Context: marine pelagic biome

Environmental Medium: coastal sea water

Other

Depth: 1

Chlorophyll: 8.995

Package

Ena Checklist: ERC000024

All retrieved samples

• SAMEA115720234: 20160331_Bin_58_1

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Metadata retrieved 4 months ago