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cognitis nomina
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Genomes
sc|0002361
JSON
Genome sc|0002361
Name
Nitrosomaritimum khambatense
Database
NCBI Assembly
Accession
GCA_011773785.1
Genomics
Accession
NCBI Assembly:
GCA_011773785.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
96.12%
Contamination:
1.94%
Quality:
86.42
Ribosomal and transfer RNA genes
1 16S rRNA (up to 26.0%)
1 23S rRNA (up to 0.0%)
tRNAs for 17 amino acids
Sequencing depth
568.1 ×
Source
BioSample: SAMN13684380
BioSample: SAMN13742134
Other features
G+C Content:
34.77%
Coding Density:
90.14%
Codon Table:
11
N50:
59,249 bp
Contigs:
42
Largest Contig:
120,693 bp
Assembly Length:
1,370,394 bp
Ambiguous Assembly Fraction:
0.3%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2017-04
Location
Lat Lon:
21.5 N 72.5 E
Toponym
Geo Loc Name:
India: Gulf of Khambhat
Environment
Sample Type:
metagenomic assembly
Isolation Source:
Pelagic sediment
Env Broad Scale:
marine biome [
ENVO:00000428
]
Env Local Scale:
marine pelagic biome [
ENVO:01000023
]
Env Medium:
deep marine sediment [
ENVO:00002113
]
Other
Depth:
1-100 cm
Package
Ncbi Submission Package:
MIMAG.sediment.5.0
•
MIMS.me.sediment.5.0
Biosamplemodel:
MIMAG.sediment
• MIGS/MIMS/MIMARKS.sediment
All retrieved samples
SAMN13684380
: MIMAG Metagenome-assembled Genome sample from Nitrosopumilaceae archaeon
SAMN13742134
: MIMS Environmental/Metagenome sample from marine sediment of Gulf of Khambhat
Metadata retrieved
18 days ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN13684380
×
Keywords: GSC:MIxS;MIMAG:5.0
collection_date
2017-04
organism
Nitrosopumilaceae archaeon
env_broad_scale
marine biome [ENVO:00000428]
metagenomic
1
derived-from
This BioSample is a metagenomic assembly obtained from the marine sediment metagenome BioSample: SAMN13742134
environmental-sample
1
env_local_scale
marine pelagic biome [ENVO:01000023]
metagenome-source
marine sediment metagenome
isolate
ACK-C021
NCBI submission package
MIMAG.sediment.5.0
depth
1-100 cm
elev
-5m to -20m
geo_loc_name
India: Gulf of Khambhat
env_medium
deep marine sediment [ENVO:00002113]
lat_lon
21.5 N 72.5 E
isolation_source
Pelagic sediment
sample-type
metagenomic assembly
BioSampleModel
MIMAG.sediment
ENA-FIRST-PUBLIC
2020-04-01
ENA-LAST-UPDATE
2021-02-28
SAMN13742134
×
Keywords: GSC:MIxS;MIMS:5.0
collection_date
2017-04
NCBI submission package
MIMS.me.sediment.5.0
depth
1-100 cm
organism
marine sediment metagenome
elev
-5m to -20m
env_broad_scale
marine biome [ENVO:00000428]
geo_loc_name
India: Gulf of Khambhat
env_medium
deep marine sediment [ENVO:00002113]
lat_lon
21.5 N 72.5 E
env_local_scale
marine pelagic biome [ENVO:01000023]
isolation_source
Pelagic sediment
BioSampleModel
MIGS/MIMS/MIMARKS.sediment
ENA-FIRST-PUBLIC
2020-05-31
ENA-LAST-UPDATE
2021-02-28
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