Genome sc|0002361

Name

Nitrosomaritimum khambatense

Database

NCBI Assembly

Accession

GCA_011773785.1

Genomics

Accession

NCBI Assembly:GCA_011773785.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

Completeness: 96.12%
Contamination: 1.94%
Quality: 86.42

Ribosomal and transfer RNA genes

1 16S rRNA (up to 26.0%)
1 23S rRNA (up to 0.0%)
tRNAs for 17 amino acids

Sequencing depth

568.1 ×

Source

Other features

G+C Content: 34.77%
Coding Density: 90.14%
Codon Table: 11
N50: 59,249 bp
Contigs: 42
Largest Contig: 120,693 bp
Assembly Length: 1,370,394 bp
Ambiguous Assembly Fraction: 0.3%

Automated checks

Complete

Last modified 9 days ago

Sample Metadata

BioSample entries

Date

Collection Date: 2017-04

Location

Lat Lon: 21° 30′ N, 72° 30′ E

View map of sampling locations

Toponym

Geo Loc Name: India: Gulf of Khambhat

Environment

Sample Type: metagenomic assembly

Isolation Source: Pelagic sediment

Env Broad Scale: marine biome [ENVO:00000428]

Env Local Scale: marine pelagic biome [ENVO:01000023]

Env Medium: deep marine sediment [ENVO:00002113]

Other

Depth: 1-100 cm

Package

Ncbi Submission Package: MIMAG.sediment.6.0 • MIMS.me.sediment.5.0

Biosamplemodel: MIMAG.sediment • MIGS/MIMS/MIMARKS.sediment

All retrieved samples

Metadata retrieved 9 days ago

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