Genome sc|0000239

Genomics

Accession

NCBI Assembly:GCA_019115785.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 90.87%
• Contamination: 1.85%
• Quality: 81.62

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 13 amino acids

Source

• BioSample: SAMN15816706
• BioSample: SAMEA104467201

Other features

• G+C Content: 61.4%
• Coding Density: 89.3%
• Codon Table: 11
• N50: 26,108 bp
• Contigs: 128
• Largest Contig: 78,028 bp
• Assembly Length: 2,341,127 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified 11 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN15816706
• BioSample: SAMEA104467201

Date

Collection Date: 2015

Location

Geographic Location Latitude: 42.7339 N

Geographic Location Longitude: 25.4858 E

Toponym

Geographic Location Country And Or Sea: Germany

Environment

Sample Type: metagenomic assembly

Environment Biome: poultry

Environment Feature: gut

Other

Host: Gallus gallus

Package

Ena Checklist: ERC000013

Ncbi Submission Package: Microbe.1.0

Biosamplemodel: Microbe, viral or environmental

Additional Accessions

ERR2241698

All retrieved samples

• SAMN15816706: Microbe sample from Candidatus Intestinimonas merdavium
• SAMEA104467201: NL-PooledPig-F1-S75

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Metadata retrieved 11 months ago