SeqCode Registry
cognitis nomina
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Genomes
sc|0000248
JSON
Genome sc|0000248
Name
“Anaerofilum excrementigallinarum”
Database
NCBI Assembly
Accession
GCA_019115305.1
Genomics
Accession
NCBI Assembly:
GCA_019115305.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
90.86%
Contamination:
1.59%
Quality:
82.91
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 17 amino acids
Source
BioSample: SAMN15816720
BioSample: SAMN08009803
Other features
G+C Content:
61.37%
Coding Density:
90.07%
Codon Table:
11
N50:
13,418 bp
Contigs:
245
Largest Contig:
72,632 bp
Assembly Length:
2,466,266 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
11 months ago
Sample Metadata
BioSample entries
BioSample: SAMN15816720
BioSample: SAMN08009803
Date
Collection Date:
2015-08-05
Location
Not detected
Toponym
Geo Loc Name:
China:Hunan
Environment
Sample Type:
metagenomic assembly
Isolation Source:
ileum
Other
Host:
Gallus gallus
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental • Metagenome or environmental
Additional Accessions
SRR6323218
All retrieved samples
SAMN15816720
: Microbe sample from Candidatus Anaerofilum excrementigallinarum
SAMN08009803
: Metagenome or environmental sample from chicken gut metagenome
Metadata retrieved
11 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN15816720
×
organism
Candidatus Anaerofilum excrementigallinarum
metagenomic
1
derived-from
This BioSample is a metagenomic assembly obtained from the publicly available reads deposited in SRA accessions: SRR6323218
environmental sample
1
Source Metagenome Bioproject
PRJNA417359
metagenome source
gut metagenome
isolate
3951
NCBI submission package
Microbe.1.0
GTDB_organism_name
Anaerofilum excrementigallinarum
host
Gallus gallus
previous_organism_name
Anaerofilum sp.
NCBI_LCA_organism_name
Anaerofilum sp.
sample-type
metagenomic assembly
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2020-09-21
ENA-LAST-UPDATE
2021-06-09
SAMN08009803
×
feed_addictive_/growth_promoter
50 mg/kg Citifac® (Chlortetracycline 20% w/w premix)
sample replicate
pooled digesta from five chickens
INSDC secondary accession
SRS2714650
organism
chicken gut metagenome
collection date
2015-08-05
isolation source
ileum
geo loc name
China:Hunan
host
Gallus gallus
host age
14-day
host gender
female
BioSampleModel
Metagenome or environmental
ENA-FIRST-PUBLIC
2017-12-03
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