SeqCode Registry
cognitis nomina
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Genomes
sc|0000250
JSON
Genome sc|0000250
Name
“Gemmiger excrementipullorum”
Database
NCBI Assembly
Accession
GCA_019115045.1
Genomics
Accession
NCBI Assembly:
GCA_019115045.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
92.61%
Contamination:
1.77%
Quality:
83.76
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 18 amino acids
Source
BioSample: SAMN15816726
BioSample: SAMN08009884
Other features
G+C Content:
64.47%
Coding Density:
89.1%
Codon Table:
11
N50:
18,136 bp
Contigs:
157
Largest Contig:
63,638 bp
Assembly Length:
2,175,465 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
11 months ago
Sample Metadata
BioSample entries
BioSample: SAMN15816726
BioSample: SAMN08009884
Date
Collection Date:
2015-09-03
Location
Not detected
Toponym
Geo Loc Name:
China:Henan
Environment
Sample Type:
metagenomic assembly
Isolation Source:
cecum
Other
Host:
Gallus gallus
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental • Metagenome or environmental
Additional Accessions
SRR6323527
All retrieved samples
SAMN15816726
: Microbe sample from Candidatus Gemmiger excrementipullorum
SAMN08009884
: Metagenome or environmental sample from chicken gut metagenome
Metadata retrieved
11 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN15816726
×
organism
Candidatus Gemmiger excrementipullorum
metagenomic
1
derived-from
This BioSample is a metagenomic assembly obtained from the publicly available reads deposited in SRA accessions: SRR6323527
environmental sample
1
Source Metagenome Bioproject
PRJNA417359
metagenome source
gut metagenome
isolate
ChiHecec2B26-7398
NCBI submission package
Microbe.1.0
GTDB_organism_name
Gemmiger excrementipullorum
host
Gallus gallus
previous_organism_name
Gemmiger sp.
NCBI_LCA_organism_name
Gemmiger sp.
sample-type
metagenomic assembly
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2020-09-21
ENA-LAST-UPDATE
2021-06-09
SAMN08009884
×
sample replicate
digesta from one chicken (biological replicate 2)
INSDC secondary accession
SRS2714837
organism
chicken gut metagenome
collection date
2015-09-03
isolation source
cecum
geo loc name
China:Henan
host
Gallus gallus
host age
235-day
host gender
female
BioSampleModel
Metagenome or environmental
ENA-FIRST-PUBLIC
2017-12-03
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