SeqCode Registry
cognitis nomina
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Genomes
sc|0000252
JSON
Genome sc|0000252
Name
“Anaerobiospirillum pullistercoris”
Database
NCBI Assembly
Accession
GCA_019114785.1
Genomics
Accession
NCBI Assembly:
GCA_019114785.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
96.9%
Contamination:
0.59%
Quality:
93.95
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 17 amino acids
Source
BioSample: SAMN15816730
BioSample: SAMN08385414
Other features
G+C Content:
48.98%
Coding Density:
76.94%
Codon Table:
11
N50:
22,076 bp
Contigs:
227
Largest Contig:
77,190 bp
Assembly Length:
3,632,682 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
11 months ago
Sample Metadata
BioSample entries
BioSample: SAMN15816730
BioSample: SAMN08385414
Date
Collection Date:
2017-03-21
Location
Lat Lon:
44.3114 N 96.7984 W
Toponym
Geo Loc Name:
USA: SD, Brookings
Environment
Sample Type:
metagenomic assembly
Isolation Source:
Cecum_9d_Rep6
Other
Host:
Gallus gallus • Chicken
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental • Metagenome or environmental
Additional Accessions
SRR6505039
All retrieved samples
SAMN15816730
: Microbe sample from Candidatus Anaerobiospirillum pullistercoris
SAMN08385414
: 1F_Cecum
Metadata retrieved
11 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN15816730
×
organism
Candidatus Anaerobiospirillum pullistercoris
metagenomic
1
derived-from
This BioSample is a metagenomic assembly obtained from the publicly available reads deposited in SRA accessions: SRR6505039
environmental sample
1
Source Metagenome Bioproject
PRJNA415593
metagenome source
gut metagenome
isolate
USASDec5-558
NCBI submission package
Microbe.1.0
GTDB_organism_name
Anaerobiospirillum pullistercoris
host
Gallus gallus
previous_organism_name
Anaerobiospirillum sp.
NCBI_LCA_organism_name
Anaerobiospirillum sp.
sample-type
metagenomic assembly
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2020-09-21
ENA-LAST-UPDATE
2021-06-09
SAMN08385414
×
INSDC secondary accession
SRS2861245
lat lon
44.3114 N 96.7984 W
organism
chicken gut metagenome
collection date
2017-03-21
isolation source
Cecum_9d_Rep6
geo loc name
USA: SD, Brookings
host
Chicken
BioSampleModel
Metagenome or environmental
ENA-FIRST-PUBLIC
2018-11-07
ENA-LAST-UPDATE
2021-02-28
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