Genome sc|0000027

Genomics

Accession

NCBI Assembly:GCA_900070205.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 97.25%
• Contamination: 2.73%
• Quality: 83.6

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

44.0 ×

Source

• BioSample: SAMN03436303

Other features

• G+C Content: 38.55%
• Coding Density: 95.69%
• Codon Table: 11
• N50: 138,435 bp
• Contigs: 35
• Largest Contig: 233,680 bp
• Assembly Length: 2,423,295 bp
• Ambiguous Assembly Fraction: 0.65%

Automated checks

Complete

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Last modified about 1 month ago

Sample Metadata

BioSample entries

• BioSample: SAMN03436303

Date

Collection Date: 2008-12-01

Location

Lat Lon: 40.74518 N 119.369659 W

Toponym

Geo Loc Name: USA: Great Boiling Spring, Nevada

Environment

Env Material: Hot springs sediment

Sample Type: metagenomic assembly

Env Biome: Hot Springs

Isolation Source: hot springs sediment

Other

Depth: 0 m

Package

Ncbi Submission Package: MIMS.me.water.5.0

Biosamplemodel: MIGS/MIMS/MIMARKS.water

All retrieved samples

• SAMN03436303: MIMS Environmental/Metagenome sample from Candidatus Thermokryptus mobilis

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Metadata retrieved about 1 month ago