Genome sc|0000271

Genomics

Accession

NCBI Assembly:GCA_001717015.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 100.0% (automated estimate: 84.6%)
• Contamination: 0.0% (automated estimate: 0.0%)
• Quality: 100.0 (automated estimate: 84.6)

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%) (automated estimate: 1)
• 1 23S rRNA (up to 100.0%) (automated estimate: 1)
• tRNAs for 20 amino acids (automated estimate: 17)

Source

• BioSample: SAMN36373251

Other features

• G+C Content: 54.42% (automated estimate: 55.41%)
• Coding Density: 89.95%
• Codon Table: 11
• N50: 20,171 bp
• Contigs: 84
• Largest Contig: 70,768 bp
• Assembly Length: 1,268,545 bp
• Ambiguous Assembly Fraction: 0.69%

Submitter comments

Genome quality including completeness and contamination was evaluated using CheckM. 16S and 23S rRNA sequences from MAGs were called using Barrnap v0.9. tRNAs were detected using tRNAscan-SE v.1.3.1.

Automated checks

Complete

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Last modified 11 months ago