Genome sc|0002748


Database

NCBI Assembly

Accession

GCA_038040325.1

Genomics

Accession
NCBI Assembly:GCA_038040325.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.41%
  • Contamination: 1.29%
  • Quality: 85.96
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 20 amino acids
Sequencing depth
3.0 ×
Other features
  • G+C Content: 69.5%
  • Coding Density: 92.25%
  • Codon Table: 11
  • N50: 46,066 bp
  • Contigs: 95
  • Largest Contig: 130,649 bp
  • Assembly Length: 2,308,231 bp
  • Ambiguous Assembly Fraction: 0.017%
Submitter comments
PLATFORM: The sequencing platform was Illumina NovaSeq 6000 S4 (2 x 150 bp).
PROGRAM: The metagenome was assembled with metaSPAdes v3.11.1 and binned using MaxBin2 v2.2.5 and MetaBAT2 v2.12.1. Annotated with Prokka v1.14.5. Functional description was done with DRAM. 
Automated checks
Complete

Last modified 4 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license