Genome sc|0002930

Genomics

Accession

INSDC Nucleotide:JAVVFV000000000.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 98.7%
• Contamination: 2.6%
• Quality: 85.7

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

103.0 ×

Source

• BioSample: SAMN35304563
• BioSample: SAMN37542201

Other features

• G+C Content: 41.3%
• Coding Density: 88.83%
• Codon Table: 11
• N50: 52,847 bp
• Contigs: 48
• Largest Contig: 153,148 bp
• Assembly Length: 1,299,652 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified about 1 month ago

Sample Metadata

BioSample entries

• BioSample: SAMN35304563
• BioSample: SAMN37542201

Date

Collection Date: 2014-05-17

Location

Lat Lon: 39.42305 N 71.22188 E

Toponym

Geo Loc Name: Tajikistan: Tamdykul hot spring

Environment

Sample Type: metagenomic assembly

Isolation Source: geothermal water

Env Medium: Water

Other

Not detected

Package

Ncbi Submission Package: MIMAG.water.6.0 • Metagenome.environmental.1.0

Biosamplemodel: MIMAG.water • Metagenome or environmental

All retrieved samples

• SAMN35304563: MIMAG Metagenome-assembled Genome sample from Desulfurococcaceae archaeon TW002
• SAMN37542201: Metagenome or environmental sample from hot springs metagenome

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Metadata retrieved about 1 month ago