SeqCode Registry
cognitis nomina
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Genomes
sc|0000298
JSON
Genome sc|0000298
Name
“Rehaiarchaeum fermentans”
Database
NCBI Assembly
Accession
SAMN31079398
Genomics
Accession
NCBI Assembly:
SAMN31079398
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
90.79%
Contamination:
0.68%
Quality:
87.39
Ribosomal and transfer RNA genes
1 16S rRNA (up to 1486.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Source
BioSample: PRJNA544494
Other features
G+C Content:
30.15%
Coding Density:
92.39%
Codon Table:
11
N50:
47,185 bp
Contigs:
35
Largest Contig:
70,130 bp
Assembly Length:
547,402 bp
Ambiguous Assembly Fraction:
0.037%
Automated checks
Complete
Last modified
about 1 month ago
Sample Metadata
BioSample entries
BioSample: PRJNA544494
Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Not detected
Other
Not detected
Package
Ncbi Package:
Generic.1.0
All retrieved samples
PRJNA544494
: Sample from a human female participant in the dbGaP study "Jackson Heart Study (JHS) Cohort"
Metadata retrieved
about 1 month ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
PRJNA544494
×
Metadata retrieved using the NCBI API
BioSample Accession(s)
PRJNA544494, SAMN00544494
gap_accession
phs000286
submitter_handle
JHS_CARe
biospecimen_repository
JHS_CARe
study_name
Jackson Heart Study (JHS) Cohort
biospecimen_repository_sample_id
DYNES_p_JHS_023_affy_GenomeWideSNP_6_B04_378964
submitted_sample_id
DYNES_p_JHS_023_affy_GenomeWideSNP_6_B04_378964
submitted_subject_id
PT-7XRR
gap_sample_id
428562
gap_subject_id
346591
sex
female
subject_is_affected
0
gap_consent_code
3
gap_consent_short_name
HMB_IRB
ncbi_package
Generic.1.0
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