SeqCode Registry
cognitis nomina
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Genomes
sc|0000003
JSON
Genome sc|0000003
Database
INSDC Nucleotide
Accession
RFPZ00000000
Genomics
Accession
INSDC Nucleotide:
RFPZ00000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
85.8%
(automated estimate: 85.8%)
Contamination:
0.0%
(automated estimate: 0.0%)
Quality:
85.8
(automated estimate: 85.8)
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
(automated estimate: 1)
1 23S rRNA (up to 100.0%)
(automated estimate: 1)
tRNAs for 19 amino acids
(automated estimate: 19)
Sequencing depth
14.3 ×
Source
BioSample: SAMN10222820
Other features
G+C Content:
61.8%
(automated estimate: 61.83%)
Coding Density:
95.46%
Codon Table:
11
N50:
15,495 bp
Contigs:
154
Largest Contig:
38,170 bp
Assembly Length:
1,233,219 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
10 months ago
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All information contributed to the SeqCode Registry is released under the terms of the
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license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
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