SeqCode Registry
cognitis nomina
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Genomes
sc|0003070
JSON
Genome sc|0003070
Name
“Cybelea tyrphae”
Database
NCBI Assembly
Accession
GCA_003133185.1
Genomics
Accession
NCBI Assembly:
GCA_003133185.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
70.01%
Contamination:
0.93%
Quality:
65.36
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 15 amino acids
Sequencing depth
15.7 ×
Source
BioSample: SAMN08179481
Other features
G+C Content:
62.0%
Coding Density:
90.37%
Codon Table:
11
N50:
11,199 bp
Contigs:
307
Largest Contig:
56,964 bp
Assembly Length:
2,548,763 bp
Ambiguous Assembly Fraction:
0.36%
Automated checks
Complete
Last modified
9 days ago
Sample Metadata
BioSample entries
BioSample: SAMN08179481
Date
Collection Date:
2012-05-04
Location
Lat Lon:
68.3535 N 19.0472 E
Toponym
Geo Loc Name:
Sweden: Stordalen Mire
Environment
Sample Type:
metagenomic assembly
Isolation Source:
permafrost active layer soil
Other
Depth:
0.01-0.05
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental
All retrieved samples
SAMN08179481
: MAG WPS2_palsa_1505 from metagenome 20120500_P31
Metadata retrieved
9 days ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN08179481
×
Metadata retrieved using the EBI API
BioSample Accession(s)
SAMN08179481, ERS18584953
strain
not applicable
altitude
363 m
collection_date
2012-05-04
organism
Candidatus Eremiobacterota bacterium
metagenomic
1
sample_type
metagenomic assembly
environmental-sample
1
metagenome-source
peat metagenome
isolate
palsa_1505
NCBI submission package
Microbe.1.0
depth
0.01-0.05
host
not applicable
name
note
geo_loc_name
Sweden: Stordalen Mire
lat_lon
68.3535 N 19.0472 E
value
This BioSample is a metagenomic assembly obtained from the 20120500_P31 metagenome BioSample: SAMN07124998.
isolation_source
permafrost active layer soil
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2018-05-19
ENA-LAST-UPDATE
2024-03-18
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