Genome sc|0003099


Database

NCBI Assembly

Accession

GCA_041946755.1

Genomics

Accession
NCBI Assembly:GCA_041946755.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.14%
  • Contamination: 0.71%
  • Quality: 91.59
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 20 amino acids
Sequencing depth
10.0 ×
Source
Other features
  • G+C Content: 41.2%
  • Coding Density: 87.92%
  • Codon Table: 11
  • N50: 15,106 bp
  • Contigs: 362
  • Largest Contig: 55,311 bp
  • Assembly Length: 3,901,861 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination were assessed using checkM2. rRNAs were annotated using barnap, however it was not possible to identify the 16S or 23S rRNA genes.
Automated checks
Complete

Last modified 27 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-04-19
Location
Lat Lon: 22.21518073 S 50.65283493 W
Toponym
Geo Loc Name: Brazil
Environment
Isolation Source: sugarcane bagasse soil; 200mm depth
Env Broad Scale: Atlantic Rain Forest
Env Local Scale: soil
Env Medium: field soil
Other
Depth: 200mm
Package
Ncbi Package: MIMS.me.soil.6.0
All retrieved samples

Metadata retrieved 27 days ago

Sequencing Experiments

Sugarcane Bagasse Soil


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