Genome sc|0000031

Genomics

Accession

NCBI Assembly:GCA_902384795.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.77%
• Contamination: 2.15%
• Quality: 86.02

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 66.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 21 amino acids

Sequencing depth

11.7 ×

Source

• BioSample: ERS2655291

Other features

• G+C Content: 49.8%
• Coding Density: 92.49%
• Codon Table: 11
• N50: 108,601 bp
• Contigs: 26
• Largest Contig: 268,376 bp
• Assembly Length: 1,472,780 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness/redundancy estimates derived from the DPANN93 marker set from Vázquez-Campos et al 2021, adjusted for commonly absent genes in DPANN (also works with other reduced archaeal genomes like in some Thermoplasmatota).
tRNA counts may include iMet, Sec, Ile2 or undetermined aminoacyl types.
rRNA gene completeness/fraction recovered, comes from Barrnap v0.7 (indicates partial fragments but might not discriminate between complete and nearly complete sequences).

Automated checks

Complete

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Last modified 10 months ago