SeqCode Registry
cognitis nomina
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Genomes
sc|0003126
JSON
Genome sc|0003126
Database
NCBI Assembly
Accession
GCA_017534965.1
Genomics
Accession
NCBI Assembly:
GCA_017534965.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
93.26%
(automated estimate: 92.5%)
Contamination:
1.12%
(automated estimate: 0.9%)
Quality:
87.64
(automated estimate: 88.0)
Ribosomal and transfer RNA genes
1 16S rRNA (up to 0.0%)
(automated estimate: 0)
0 23S rRNAs
(automated estimate: 0)
tRNAs for 19 amino acids
(automated estimate: 20)
Sequencing depth
30.0 ×
Source
BioSample: SAMN16347242
Other features
G+C Content:
35.04%
(automated estimate: 35.04%)
Coding Density:
93.69%
Codon Table:
11
N50:
48,530 bp
Contigs:
47
Largest Contig:
238,907 bp
Assembly Length:
1,321,745 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
12 days ago
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All information contributed to the SeqCode Registry is released under the terms of the
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license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
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