Genome sc|0000315


Database

NCBI Assembly

Accession

GCA_000737195.2

Genomics

Accession
NCBI Assembly:GCA_000737195.2
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 98.1% (automated estimate: 97.2%)
  • Contamination: 0.6% (automated estimate: 4.7%)
  • Quality: 95.1 (automated estimate: 73.7)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%) (automated estimate: 1)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 21 amino acids (automated estimate: 21)
Sequencing depth
13.0 ×
Source
Other features
  • G+C Content: 68.67% (automated estimate: 68.67%)
  • Coding Density: 92.2%
  • Codon Table: 11
  • N50: 84,074 bp
  • Contigs: 216
  • Largest Contig: 314,041 bp
  • Assembly Length: 7,420,343 bp
  • Ambiguous Assembly Fraction: 0.0012%
Submitter comments
See full comment
Automated checks
Complete

Last modified 6 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2008
Location
Lat Lon: 2.42 N 101.86 E
Toponym
Geo Loc Name: Malaysia: Cape Rachado (Tanjung Tuan)
Environment
Sample Type: Whole organisms
Isolation Source: intertidal sediment
Env Broad Scale: intertidal sediment(ENVO:00002179)
Env Local Scale: intertidal sediment(ENVO:00002179)
Env Medium: intertidal sediment(ENVO:00002179)
Other
Rel To Oxygen: aerobe
Package
Ncbi Package: Generic.1.0
All retrieved samples

Metadata retrieved 8 months ago


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