# BUSCO version is: 5.3.2
# The lineage dataset is: actinobacteria_class_odb10 (Creation date: 2021-02-23, number of genomes: 948, number of BUSCOs: 356)
# Summarized benchmarking in BUSCO notation for file /data/dnb06/galaxy_db/files/4/2/7/dataset_427ad92c-4f0b-41ad-9c3c-499abaf6e9e9.dat
# BUSCO was run in mode: genome
# Gene predictor used: prodigal
***** Results: *****
C:98.1%[S:97.5%,D:0.6%],F:1.4%,M:0.5%,n:356
349 Complete BUSCOs (C)
347 Complete and single-copy BUSCOs (S)
2 Complete and duplicated BUSCOs (D)
5 Fragmented BUSCOs (F)
2 Missing BUSCOs (M)
356 Total BUSCO groups searched
Dependencies and versions:
hmmsearch: 3.1
prodigal: 2.6.3
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http://www.protologger.de
Protologger v0.99; Run date: 2022-11-16
Quality check
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The input 16S rRNA gene is acceptable at 95.2919020716% complete compared to its closest relative
The input 16S rRNA gene was not identified as a chimera.
The input genome is of high quality and suitable for analysis
Genome completeness is ;99.04
Genome contamination is ;0.53
16S rRNA gene analysis
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The input 16S rRNA determined the isolate to be; sp. nov.
The best match was to; Sciscionella marina--Pseudonocardiaceae--EU503139 (Valid) (97.3324213406%)
Genome analysis
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Genome based assignment via GTDB-Tk placed the genome as; d__Bacteria;p__Actinobacteriota;c__Actinobacteria;o__Mycobacteriales;f__Pseudonocardiaceae;g__Sciscionella;s__Sciscionella sp000737195
GTDB-Tk was able to assign the genome to; GCF_000737195.2
The genome size is; 7.42Mbp base pairs
G+C percentage is; 68.67%
ANI identified the input genome as novel, with the best match being to Sciscionella_marina with a value of 93.4541%
No validly named species with a sequenced genome within the GTDB-Tk database was identified to have a ANI value >95% with the studied genome
The input genome was assigned to Amycolatopsis with a POCP value of 51.2909888975%
CRISPR arrays identified; 0
Coding sequences identified; 7041
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http://microbial-genomes.org/
Ribosomal RNA (small subunit)
MiGA found 1 16S ribosomal RNA
Ssu: 1
Complete ssu: 1
Max length: 1,515