SeqCode Registry
cognitis nomina
About
Search
•
Login
Register
Genomes
sc|0003151
JSON
Genome sc|0003151
Database
INSDC Nucleotide
Accession
DAWERN000000000.1
Genomics
Accession
INSDC Nucleotide:
DAWERN000000000.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
100.0%
Contamination:
0.0%
Quality:
100.0
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
Sequencing depth
10.0 ×
Source
SRA: SRR8863434
SRA: SRR8863435
SRA: SRR8863439
Other features
G+C Content:
25.0%
Submitter comments
Circular endosymbiont genome. Completeness and contamination based on the circularity, not marker gene content
Automated checks
Failed: Cannot find ncbi:nuccore:DAWERN000000000.1
Last modified
about 1 month ago
Sample Metadata
BioSample entries
BioSample: SRS4596138
BioSample: SRS4596137
BioSample: SRS4596145
Date
Collection Date:
2014 • 2016
Location
Lat Lon:
39.6974 N 83.8897 W
Toponym
Geo Loc Name:
USA: Ohio
Environment
Isolation Source:
ground water
Other
Not detected
Package
Ncbi Submission Package:
Metagenome.environmental.1.0
Biosamplemodel:
Metagenome or environmental
All retrieved samples
SRS4596138
: Ohio Ground Water Y2 Reads
SRS4596137
: Ohio Ground Water X1 Reads
SRS4596145
: Ohio Ground Water Y4 Reads
Metadata retrieved
about 1 month ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SRS4596138
×
Metadata retrieved using the EBI API via SRR8863434 (linked through the EBI API)
collection_date
2014
INSDC secondary accession
SRS4596138
NCBI submission package
Metagenome.environmental.1.0
source_material_id
OGW_Y2
organism
groundwater metagenome
geo_loc_name
USA: Ohio
lat_lon
39.6974 N 83.8897 W
isolation_source
ground water
BioSampleModel
Metagenome or environmental
ENA-FIRST-PUBLIC
2019-04-03
ENA-LAST-UPDATE
2019-05-17
SRS4596137
×
Metadata retrieved using the EBI API via SRR8863435 (linked through the EBI API)
collection_date
2014
INSDC secondary accession
SRS4596137
NCBI submission package
Metagenome.environmental.1.0
source_material_id
OGW_X1
organism
groundwater metagenome
geo_loc_name
USA: Ohio
lat_lon
39.6974 N 83.8897 W
isolation_source
ground water
BioSampleModel
Metagenome or environmental
ENA-FIRST-PUBLIC
2019-04-03
ENA-LAST-UPDATE
2019-05-17
SRS4596145
×
Metadata retrieved using the EBI API via SRR8863439 (linked through the EBI API)
collection_date
2016
INSDC secondary accession
SRS4596145
NCBI submission package
Metagenome.environmental.1.0
source_material_id
OGW_Y4
organism
groundwater metagenome
geo_loc_name
USA: Ohio
lat_lon
39.6974 N 83.8897 W
isolation_source
ground water
BioSampleModel
Metagenome or environmental
ENA-FIRST-PUBLIC
2019-04-03
ENA-LAST-UPDATE
2019-05-17
Search
×
Names
Publications
Authors
Subjects