JSON

Genome sc|0003161

Name

“Phycorembacter enigmaticus”

Database

NCBI Assembly

Accession

GCA_045401115.1

Genomics

Accession
NCBI Assembly:GCA_045401115.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.45%
  • Contamination: 0.54%
  • Quality: 95.75
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 93.0%)
  • tRNAs for 19 amino acids
Sequencing depth
380.0 ×
Source
Other features
  • G+C Content: 44.05%
  • Coding Density: 88.98%
  • Codon Table: 11
  • N50: 721,362 bp
  • Contigs: 1
  • Largest Contig: 721,362 bp
  • Assembly Length: 721,362 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination was assessed with CheckM2. Taxonomic novelty and classification was based on outputs from GTDB, TGYS, and MiGA on AAI, dDDH, and RED scores.
Automated checks
Complete
Last modified 11 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2023-01-20
Location
Lat Lon: 39.298342 N 76.496257 W
Toponym
Geo Loc Name: USA: Baltimore
Environment
Sample Type: metagenomic assembly
Isolation Source: non-axenic Nannochloropsis oceanica microalgal culture
Env Broad Scale: Microalgal culture
Env Local Scale: photobioreactor
Env Medium: F/2 microalgal medium
Other
Not detected
Package
Ncbi Package: MIMAG.miscellaneous.6.0
Additional Accessions
SRR31252394
All retrieved samples
Metadata retrieved 12 days ago

Sequencing Experiments

Metagenomic sequencing of N. oceanica IMET1 cultures


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