SeqCode Registry
cognitis nomina
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Genomes
sc|0003165
JSON
Genome sc|0003165
Database
NCBI Assembly
Accession
GCF_000305775.1
Genomics
Accession
NCBI Assembly:
GCF_000305775.1
Type
Enrichment Genome
Estimated Quality Metrics
Completeness:
99.94%
(automated estimate: 98.1%)
Contamination:
0.77%
(automated estimate: 2.8%)
Quality:
96.09
(automated estimate: 84.1)
Ribosomal and transfer RNA genes
3 16S rRNAs (up to 100.0%)
(automated estimate: 3)
3 23S rRNAs (up to 100.0%)
(automated estimate: 3)
tRNAs for 21 amino acids
Sequencing depth
1000.0 ×
Source
BioSample: SAMN39845673
Other features
G+C Content:
45.0%
(automated estimate: 44.61%)
Coding Density:
85.98%
Codon Table:
11
N50:
3,069,953 bp
Contigs:
1
Largest Contig:
3,069,953 bp
Assembly Length:
3,069,953 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
9 days ago
Sample Metadata
BioSample entries
BioSample: SAMN39845673
Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Not detected
Other
Not detected
Package
Ncbi Submission Package:
Generic.1.0
Biosamplemodel:
Generic
All retrieved samples
SAMN02604247
: Sample from Dehalobacter sp. DCA
Metadata retrieved
9 days ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN02604247
×
Metadata retrieved using the EBI API
BioSample Accession(s)
SAMN02604247
strain
DCA
NCBI submission package
Generic.1.0
organism
Dehalobacter sp. DCA
BioSampleModel
Generic
ENA-FIRST-PUBLIC
2014-01-30
ENA-LAST-UPDATE
2015-05-18
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