SeqCode Registry
cognitis nomina
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Genomes
sc|0003166
JSON
Genome sc|0003166
Name
“Dehalobacter aromaticus”
Database
NCBI Assembly
Accession
GCF_004343605.1
Genomics
Accession
NCBI Assembly:
GCF_004343605.1
Type
Enrichment Genome
Estimated Quality Metrics
Completeness:
99.94%
Contamination:
0.04%
Quality:
99.74
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 71.0%)
tRNAs for 21 amino acids
Sequencing depth
100.0 ×
Source
BioSample: SAMN08326678
Other features
G+C Content:
44.5%
Coding Density:
87.01%
Codon Table:
11
N50:
344,508 bp
Contigs:
22
Largest Contig:
410,744 bp
Assembly Length:
2,850,914 bp
Ambiguous Assembly Fraction:
0.003%
Automated checks
Complete
Last modified
16 days ago
Sample Metadata
BioSample entries
BioSample: SAMN08326678
Date
Collection Date:
2005
Location
Not detected
Toponym
Geo Loc Name:
USA: New Jersey
Environment
Sample Type:
pure culture
Isolation Source:
sediment from drainage ditch
Other
Not detected
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental
All retrieved samples
SAMN08326678
: Microbe sample from Dehalobacter sp. 12DCB1
Metadata retrieved
16 days ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN08326678
×
Metadata retrieved using the EBI API
BioSample Accession(s)
SAMN08326678
strain
12DCB1
collection_date
2005
NCBI submission package
Microbe.1.0
organism
Dehalobacter sp. 12DCB1
geo_loc_name
USA: New Jersey
sample_type
pure culture
isolation_source
sediment from drainage ditch
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2019-02-28
ENA-LAST-UPDATE
2019-02-28
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