SeqCode Registry
cognitis nomina
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Genomes
sc|0003169
JSON
Genome sc|0003169
Name
“Thioglobus autotrophicus”
Database
NCBI Assembly
Accession
GCF_001293165.1
Genomics
Accession
NCBI Assembly:
GCF_001293165.1
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
100.0%
Contamination:
0.1%
Quality:
99.5
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 19 amino acids
Sequencing depth
106.0 ×
Source
BioSample: GCF_001293165.1
Other features
G+C Content:
39.14%
Coding Density:
93.32%
Codon Table:
11
N50:
1,512,449 bp
Contigs:
1
Largest Contig:
1,512,449 bp
Assembly Length:
1,512,449 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
13 days ago
Sample Metadata
BioSample entries
BioSample: GCF_001293165.1
Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Analyte Type:
DNA
Other
Not detected
Package
Ncbi Package:
Generic.1.0
All retrieved samples
GCF_001293165.1
: DNA sample from a human male participant in the dbGaP study "Framingham SHARe Hemoglobin Insulin"
Metadata retrieved
13 days ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
GCF_001293165.1
×
Metadata retrieved using the NCBI API
BioSample Accession(s)
GCF_001293165.1, SAMN01293165
gap_accession
phs000031
submitter_handle
Framingham_SHARe
biospecimen_repository
Framingham_SHARe
study_name
Framingham SHARe Hemoglobin Insulin
biospecimen_repository_sample_id
20252
submitted_sample_id
20252
submitted_subject_id
20252
gap_sample_id
100914
gap_subject_id
27705
sex
male
analyte_type
DNA
subject_is_affected
gap_consent_code
2
gap_consent_short_name
NPU
ncbi_package
Generic.1.0
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