Keywords: GSC:MIxS;MIMAG:6.0

BioSample Accession(s)

SAMN31047463, ERS17614759

collection_date

2014-06

number_of_host_metagenomes

3

organism

Candidatus Aldehydirespirator catecholifindens

isolation-source

sponge tissue, low temperature high CO2

env_broad_scale

coral reef [ENVO:00000150]

metagenomic

1

derived-from

SAMN13227200, SAMN13227201, SAMN13227207

environmental-sample

1

env_local_scale

coral reef [ENVO:00000150]

metagenome-source

sponge metagenome

isolate

m_calh10

NCBI submission package

MIMAG.host-associated.6.0

experimental_conditions

low temperature high CO2

host

Phyllospongia foliascens

geo_loc_name

Australia: Davies Reef, Great Barrier Reef

env_medium

sponge

lat_lon

18.816 S 147.633 E

sample-type

metagenomic assembly

BioSampleModel

MIMAG.host-associated

ENA-FIRST-PUBLIC

2022-10-01

ENA-LAST-UPDATE

2023-12-19

BioSample Accession(s)

SAMN13227200, SRS5616644

collection_date

2014-06

INSDC secondary accession

SRS5616644

NCBI submission package

Metagenome.environmental.1.0

Treatment

28.5_1200_rep1

organism

sponge metagenome

isolation-source

sponge tissue

host

Phyllospongia foliascens

geo_loc_name

Australia: Davies Reef, Great Barrier Reef

samp_mat_process

microbes separated from host by filtration and centrifugation

lat_lon

18.816 S 147.633 E

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2019-11-06

ENA-LAST-UPDATE

2023-09-03

BioSample Accession(s)

SAMN13227201, SRS5616645

collection_date

2014-06

INSDC secondary accession

SRS5616645

NCBI submission package

Metagenome.environmental.1.0

Treatment

28.5_1200_rep2

organism

sponge metagenome

isolation-source

sponge tissue

host

Phyllospongia foliascens

geo_loc_name

Australia: Davies Reef, Great Barrier Reef

samp_mat_process

microbes separated from host by filtration and centrifugation

lat_lon

18.816 S 147.633 E

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2019-11-06

ENA-LAST-UPDATE

2023-09-03

BioSample Accession(s)

SAMN13227207, SRS5616652

collection_date

2014-06

INSDC secondary accession

SRS5616652

NCBI submission package

Metagenome.environmental.1.0

Treatment

28.5_1200_rep3

organism

sponge metagenome

isolation-source

sponge tissue

host

Phyllospongia foliascens

geo_loc_name

Australia: Davies Reef, Great Barrier Reef

samp_mat_process

microbes separated from host by filtration and centrifugation

lat_lon

18.816 S 147.633 E

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2019-11-06

ENA-LAST-UPDATE

2023-09-03

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX7105454" alias="CA5" center_name="SUB6516238" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX7105454</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB6516238">CA5</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Metagenomes of microbes from Carteriospongia foliascens</TITLE>
  <STUDY_REF accession="SRP228733">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP228733</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB6516238">bp0</SUBMITTER_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>DNA extracted on microbes separated from host by filtration and centrifugation</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS5616644">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS5616644</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|hluter">Carteriospongia_5</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>CA5</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS5616644</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA992141</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX7105454&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX7105454&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX7105455" alias="CA4" center_name="SUB6516238" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX7105455</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB6516238">CA4</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Metagenomes of microbes from Carteriospongia foliascens</TITLE>
  <STUDY_REF accession="SRP228733">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP228733</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB6516238">bp0</SUBMITTER_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>DNA extracted on microbes separated from host by filtration and centrifugation</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS5616645">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS5616645</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|hluter">Carteriospongia_4</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>CA4</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS5616645</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA992141</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX7105455&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX7105455&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX7105462" alias="CA12" center_name="SUB6516238" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX7105462</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB6516238">CA12</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Metagenomes of microbes from Carteriospongia foliascens</TITLE>
  <STUDY_REF accession="SRP228733">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP228733</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB6516238">bp0</SUBMITTER_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>DNA extracted on microbes separated from host by filtration and centrifugation</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS5616652">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS5616652</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|hluter">Carteriospongia_12</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>CA12</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS5616652</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA992141</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX7105462&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX7105462&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>