Genome sc|0000336

Genomics

Accession

NCBI Assembly:GCA_028283245.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 92.31%
• Contamination: 0.85%
• Quality: 88.06

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 80.0%)
• 0 23S rRNAs
• tRNAs for 20 amino acids

Sequencing depth

15.0 ×

Source

• BioSample: SAMN31047463

Other features

• G+C Content: 57.59%
• Coding Density: 91.84%
• Codon Table: 11
• N50: 36,208 bp
• Contigs: 104
• Largest Contig: 124,589 bp
• Assembly Length: 2,593,093 bp
• Ambiguous Assembly Fraction: 0.0016%

Submitter comments

Completeness and contamination were assessed with CheckM v1.1.0 using a lineage-specific workflow.

JAPYNU000000000, which is the proposed type genome of this species has an incomplete 16S rRNA genome. We have not been able to assemble a better 16S rRNA gene sequence for this species, including the three other genomes we have for the species (see linked publication for details).

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2014-06

Location

Lat Lon: 18.816 S 147.633 E

Toponym

Geo Loc Name: Australia: Davies Reef, Great Barrier Reef

Environment

Sample Type: metagenomic assembly

Isolation Source: sponge tissue, low temperature high CO2

Env Broad Scale: coral reef [ENVO:00000150]

Env Local Scale: coral reef [ENVO:00000150]

Env Medium: sponge

Other

Host: Phyllospongia foliascens

Package

Ncbi Submission Package: MIMAG.host-associated.6.0

Biosamplemodel: MIMAG.host-associated

Additional Accessions

SAMN13227200, SAMN13227201, SAMN13227207

All retrieved samples

• SAMN31047463: MIMAG Metagenome-assembled Genome sample from Candidatus Aldehydirespirator catecholifindens

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Metadata retrieved 10 months ago