SeqCode Registry
cognitis nomina
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Genomes
sc|0000346
JSON
Genome sc|0000346
Database
NCBI Assembly
Accession
JAQQAK000000000
Genomics
Accession
NCBI Assembly:
JAQQAK000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
82.69%
(automated estimate: 81.1%)
Contamination:
4.98%
(automated estimate: 5.7%)
Quality:
57.79
(automated estimate: 52.6)
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
(automated estimate: 1)
0 23S rRNAs
(automated estimate: 0)
tRNAs for 16 amino acids
(automated estimate: 19)
Sequencing depth
50.0 ×
Source
SRA: SRR22396528
Other features
G+C Content:
36.11%
(automated estimate: 36.11%)
Coding Density:
90.52%
Codon Table:
11
N50:
9,476 bp
Contigs:
477
Largest Contig:
42,137 bp
Assembly Length:
3,676,430 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
11 months ago
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All information contributed to the SeqCode Registry is released under the terms of the
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license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
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