JSON

Genome sc|0003498

Name

Not registered

Database

INSDC Nucleotide

Accession

SAMN44461971

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
INSDC Nucleotide:SAMN44461971
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.8%
  • Contamination: 1.59%
  • Quality: 90.85
Ribosomal and transfer RNA genes
  • 3 16S rRNAs (up to 100.0%)
  • 3 23S rRNAs (up to 100.0%)
Source
Other features
  • G+C Content: 38.0%
Submitter comments
Genome quality was assessed with CheckM2,  rRNAs were detected with barrnap, and tRNAs with Infernal. 
Automated checks
Failed: Cannot find ncbi:nuccore:SAMN44461971
Edit genome data
Last modified 5 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2021-07-27 • 2021-10-26 • 2022-01-13 • 2022-03-08 • 2022-04-28 • 2022-07-07 • 2021-08-11
Location
Lat Lon: 49° 15′ 48″ N, 123° 14′ 56″ W
View map of sampling locations
Toponym
Geo Loc Name: Canada: Vancouver, British Columbia • Canada: Vancouver, BC
Environment
Isolation Source: Anaerobic digester Fluid • Anaerobic digester fluid
Gold Ecosystem Classification: Engineered | Bioreactor | Anaerobic | Unclassified | Unclassified
Other
Not detected
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Metagenome or environmental
All retrieved samples
Metadata retrieved 5 months ago


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