Genome sc|0003506


Database

INSDC Nucleotide

Accession

SAMN46525287

Genomics

Accession
INSDC Nucleotide:SAMN46525287
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.96%
  • Contamination: 0.3%
  • Quality: 96.46
Ribosomal and transfer RNA genes
  • -2 16S rRNAs (up to 966.0%)
  • 1 23S rRNA (unknown length)
Source
Other features
  • G+C Content: 52.29%
Submitter comments
 Shotgun-sequenced raw reads were processed using SeqPrep (https://github.com/jstjohn/SeqPrep) under default settings to merge overlapping paired-end reads and trim adaptors. Metagenomic assembly and binning were performed using the Aviary pipeline: pre-processed reads (post-SeqPrep) were first assembled with metaSPAdes, then Minimap2 and Samtools were used to map sequences back to the assemblies and CoverM was used to generate coverage reports. Multiple tools were used in the binning step of Aviary pipeline, including CONCOCT, VAMB, MetaBAT, MetaBAT2, MaxBin2, Rosella and DASTool.

Automated checks
Failed: Cannot find ncbi:nuccore:SAMN46525287

Last modified 4 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-04
Location
Lat Lon: 38° 58′ 12″ S, 179° 7′ 48″ E
View map of sampling locations
Toponym
Geo Loc Name: New Zealand: Hikurangi Subduction Margin
Environment
Isolation Source: deep sea sediment (BioSample: SAMN44063530)
Env Broad Scale: marine
Env Local Scale: marine sediment
Env Medium: sediment
Other
Depth: 160.76 mbsf
Package
Ncbi Package: MIMAG.sediment.6.0
All retrieved samples

Metadata retrieved 4 months ago


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