Editing Genome sc|0003532

Name

Not registered

Database

INSDC Nucleotide

Accession

GCA_048161455.1

Genome information

General information about the sequenced genome

Type of genome *

Sequencing depth (X)Required for isolate genomes, optional (but recommended) for all other types

Source material

Database entry describing the source material from which the genome was derived

Database *

Accession *Multiple accessions in the same database can be reported separated by comma (,)

Quality assessment

Quality metrics assessed by the submitter. If left empty, automated assesment will be used to fill-up all the information below.

G+C content (%)

Estimated completeness (%)

Estimated contamination (%)

Fraction of the most complete 16S rRNA gene fragment (%)

Number of 16S rRNA gene fragments

Fraction of the most complete 23S rRNA gene fragment (%)

Number of 23S rRNA gene fragments

Number of standard amino acids for which tRNA elements were detectedPlease indicate the number of distinct amino acids, not the total number of tRNA elements

Methods and Comments

Describe in detail the methods used to assess the quality metrics above, and comment on any potential issues related to this genome

Submitter comments

The genome quality was assessed with CheckM2. The gene function was annotated with bakta using default settings.

Reference
Check2: Chklovski A, Parks DH, Woodcroft BJ et al. CheckM2: A rapid, scalable and accurate tool for assessing microbial genome quality using machine learning. Nat Methods 2023;20:1203−12. https://doi.org/10.1038/s41592-023-01940-w.
bakta: Schwengers O, Jelonek L, Dieckmann MA et al. Bakta: Rapid and standardized annotation of bacterial genomes via alignment-free sequence identification. Microb Genomics 2021;7 https://doi.org/10.1099/mgen.0.000685.

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