JSON

Genome sc|0003546

Name

Not registered

Database

NCBI Assembly

Accession

SAMN47300803, SAMN47300802

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:SAMN47300803•SAMN47300802
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 99.25%
  • Contamination: 2.5%
  • Quality: 86.75
Sequencing depth
20.0 ×
Source
Other features
  • G+C Content: 48.2%
Submitter comments
The metagenomic assembly of the sample was performed on the KBase platform. After quality trimming with Trimmomatic, contigs were assembled using metaSPAdes. Binning was conducted with MaxBin2, MetaBAT2, and CONCOCT, and refined using DAS-Tool. The resulting MAG was quality-checked with CheckM and classified according to Bowers et al. (2017) standards.
Automated checks
Failed: Cannot find ncbi:assembly:SAMN47300803, SAMN47300802
Edit genome data
Last modified 4 months ago

Sample Metadata

BioSample entries
Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Not detected
Other
Not detected
Package
Not detected
All retrieved samples
Metadata retrieved 4 months ago


© 2022-2025 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license