Genome sc|0003547

Genomics

Accession

NCBI Assembly:GCA_041875495.1

Cultures

Strain sc|0038929

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 100.0%
• Contamination: 1.9%
• Quality: 90.5

Ribosomal and transfer RNA genes

• 6 16S rRNAs (up to 100.0%)
• 6 23S rRNAs (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

800.0 ×

Source

• BioSample: SAMN31764500

Other features

• G+C Content: 55.7%
• Coding Density: 89.03%
• Codon Table: 11
• N50: 3,667,964 bp
• Contigs: 1
• Largest Contig: 3,667,964 bp
• Assembly Length: 3,667,964 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

The strain was grown in 10% NaCl at 37℃ for 36 h (OD600=2.0). Genomic DNA was extracted using Wizard® Genomic DNA Purification Kit (Promega, A1120, USA) according to manufacture’ s protocol and quantified using TBS-380 fluorometer (Turner BioSystems Inc., Sunnyvale, CA). The genome was sequenced by Shanghai Majorbio Biopharm Technology Co., Ltd (Shanghai, China) using the combination of Illumina Hiseq and PacBio RS II Single MoleculeReal Time (SMRT) sequencing platforms. The complete genome sequence was assembled using both the PacBio and Illumina reads. The Unicycler software (v0.4.7) was used for genome assembly. 

Automated checks

Complete

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Last modified 4 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN31764500

Date

Collection Date: 2018-07-01

Location

Not detected

Toponym

Geo Loc Name: China: Qinghai Province

Environment

Sample Type: cell culture

Isolation Source: Chaka Salt Lake, China

Other

Not detected

Package

Ncbi Submission Package: Microbe.1.0

Biosamplemodel: Microbe, viral or environmental

All retrieved samples

• SAMN31764500: Halomonas chakariensis sp. nov. strain CH40

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Metadata retrieved 4 months ago