Genome sc|0003550


Name

Not registered

Database

NCBI Assembly

Accession

JBIGIE000000000

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:JBIGIE000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.62%
  • Contamination: 2.43%
  • Quality: 84.47
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 64.73%)
  • 0 23S rRNAs
  • tRNAs for 18 amino acids
Sequencing depth
40.0 ×
Source
Other features
  • G+C Content: 65.3%
Submitter comments
Environmental genomic DNA of enrichment samples were duplexed and sequenced within the Illumina platform from Beijing Biomark Biotechnology, which were then assembled into longer contiguous sequences known as contigs using SPAdes (ver. 3.15.5) (Harrison, Strulo, 2000). The contigs were grouped into bins based on their similarities, utilizing characteristics such as coverage depth and sequence composition, and the quality of the recovered bins was assessed using tools like CheckM or QUAST to evaluate completeness and contamination levels. Medium to high-quality metagenome-assembled genomes (MAGs) were classified using the GTDB and annotated to predict their functional capabilities via databases such as KEGG or COG. 
Automated checks
Failed: Cannot find ncbi:assembly:JBIGIE000000000

Last modified 3 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2023-06-15
Location
Lat Lon: 40° 49′ 12″ N, 90° 37′ 12″ E
View map of sampling locations
Toponym
Geo Loc Name: China: Hami, Barkol Lake
Environment
Sample Type: metagenomic assembly
Isolation Source: saline lake sediment
Other
Not detected
Package
Ncbi Submission Package: MIMAG.6.0
Biosamplemodel: MIMAG
Additional Accessions
SAMN44302782 Append as BioSamples
All retrieved samples

Metadata retrieved 3 months ago


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