Genome sc|0003553


Name

Not registered

Database

NCBI Assembly

Accession

GCA_965234365

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:GCA_965234365
Cultures
Strain sc|0038786
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.16%
  • Contamination: 2.52%
  • Quality: 86.56
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
1130.0 ×
Source
Other features
  • G+C Content: 48.8%
Submitter comments
Genome of a culture that was harvested by filtration on 0.22 µm filters; DNA was extracted with the Quiagen MagAttract HMW DNA kit. Sequencing was done with Illuminia Novaseq 6000, trimming of reads with BBMap v36.x, assembly with SPAdes v3.12.0. The genome was manually curated to a circular chromosome in Geneious 10 by repeated rounds of read mapping. Completeness and contamination were assessed with CheckM, but as the genome consists of a circular chromosome, it should be complete without any contamination.
Automated checks
Failed: Cannot find ncbi:assembly:GCA_965234365

Last modified 3 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2019-04-23
Location
Geographic Location Latitude: 48° 50′ 55″ N
Geographic Location Longitude: 14° 29′ 27″ E
View map of sampling locations
Toponym
Geographic Location Country And Or Sea: Czechia
Environment
Broad Scale Environmental Context: aquatic
Local Environmental Context: Lake Rimov - Ceske Budejovice - Czech Republic
Environmental Medium: water
Other
Depth: 0.5
Package
Ena Checklist: ERC000024
All retrieved samples

Metadata retrieved 3 months ago


© 2022-2025 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license