Genome sc|0000361

Genomics

Accession

NCBI Assembly:SAMN20205121

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 91.2%
• Contamination: 5.04%
• Quality: 66.0

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 35.0%)
• 1 23S rRNA (up to 28.0%)
• tRNAs for 20 amino acids

Sequencing depth

2.344 ×

Source

• BioSample: PRJNA743900

Other features

• G+C Content: 65.34%

Submitter comments

CheckM v1.0.11 was used to determine MAG completeness and contamination. Barrnap v0.7 was used to extract 16S rRNA gene sequences from the MAG and assess sequence completion. The number of amino acids was counted from the Prodigal v2.6.2 translated proteome output. G/C content was calculated as a ratio of the entire genome. Assessed tRNAs with tRNAscan-SE v.2.0.12 and counted only distinct, standard tRNA.

Automated checks

Failed: Cannot find ncbi:assembly:SAMN20205121

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Last modified over 1 year ago