Genome sc|0003619

Genomics

Accession

NCBI Assembly:GCA_043498175.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.62%
• Contamination: 2.43%
• Quality: 84.47

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 61.0%)
• 1 23S rRNA (up to 31.0%)
• tRNAs for 19 amino acids

Sequencing depth

40.0 ×

Source

• BioSample: SAMN44286443
• BioSample: SAMN44302782

Other features

• G+C Content: 65.15%
• Coding Density: 89.64%
• Codon Table: 11
• N50: 56,019 bp
• Contigs: 101
• Largest Contig: 211,419 bp
• Assembly Length: 2,981,608 bp
• Ambiguous Assembly Fraction: 0.23%

Automated checks

Complete

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Last modified about 2 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN44286443
• BioSample: SAMN44302782

Date

Collection Date: 2023-06-15

Location

Lat Lon: 40° 49′ 12″ N, 90° 37′ 12″ E

View map of sampling locations

Toponym

Geo Loc Name: China: Hami, Barkol Lake

Environment

Sample Type: metagenomic assembly

Isolation Source: saline lake sediment

Other

Depth: 1m

Package

Ncbi Submission Package: MIMAG.6.0 • Metagenome.environmental.1.0

Biosamplemodel: MIMAG • Metagenome or environmental

All retrieved samples

• SAMN44286443: MIMAG Metagenome-assembled Genome sample from Wenzhouxiangellaceae bacterium
• SAMN44302782: Metagenome or environmental sample from sediment metagenome

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Metadata retrieved about 2 months ago