BioSample Accession(s)

SAMN10593108, SRS4337691

strain

Chuk17

collection_date

2016-07

INSDC secondary accession

SRS4337691

NCBI submission package

Microbe.1.0

identified_by

Vasil A. Gaisin and Vladimir M. Gorlenko

organism

Candidatus Oscillochloris fontis

geo_loc_name

Russia: Chukotka, Mechigmenskiy hot spring

collected_by

Ilya Kublanov

sample_type

mixed culture

isolation_source

enrichment culture inoculated with microbal mat from hot spring

BioSampleModel

Microbe, viral or environmental

ENA-FIRST-PUBLIC

2018-12-14

ENA-LAST-UPDATE

2021-02-28

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX5345971" alias="Oscillochloris sp. Chuk17" center_name="SUB5140456" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX5345971</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB5140456">Oscillochloris sp. Chuk17</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Genome Sequence of Oscillochloris sp. Chuk17</TITLE>
  <STUDY_REF accession="SRP184455">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP184455</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA510031</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>The libraries  were constructed with the NEBNext DNA  library prep reagent set for Illumina,  according to the protocol for the kit.</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS4337691">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS4337691</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN10593108</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Oscillochloris sp. Chuk17</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS4337691</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA845852</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX5345971&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX5345971&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>