SeqCode Registry
cognitis nomina
About
Search
•
Login
Register
Genomes
sc|0003670
JSON
Genome sc|0003670
Name
“Hydrothermoacidobacter sulfidicus”
Database
NCBI Assembly
Accession
GCA_048541835.1
Genomics
Accession
NCBI Assembly:
GCA_048541835.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
92.24%
Contamination:
0.86%
Quality:
87.94
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
240.0 ×
Source
BioSample: SAMN46423327
Other features
G+C Content:
37.24%
Coding Density:
90.68%
Codon Table:
11
N50:
897,753 bp
Contigs:
4
Largest Contig:
897,753 bp
Assembly Length:
1,735,162 bp
Ambiguous Assembly Fraction:
0.012%
Automated checks
Complete
Last modified
about 1 month ago
Sample Metadata
BioSample entries
BioSample: SAMN46423327
Date
Collection Date:
2019-05-19
Location
Not detected
Toponym
Geo Loc Name:
Indian Ocean
Environment
Sample Type:
metagenomic assembly
Isolation Source:
ocean
Other
Not detected
Package
Ncbi Package:
Microbe.1.0
All retrieved samples
SAMN46423327
: Microbe sample from Candidatus Acidulodesulfobacterium sp. H_13
Metadata retrieved
about 2 months ago
© 2022-2025 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN46423327
×
Metadata retrieved using the NCBI API
BioSample Accession(s)
SAMN46423327,
strain
H_13
isolation_source
ocean
collection_date
2019-05-19
geo_loc_name
Indian Ocean
sample_type
metagenomic assembly
ncbi_package
Microbe.1.0
Search
×
Names
Genomes
Publications
Authors
Subjects