Genome sc|0000368

Genomics

Accession

NCBI Assembly:GCA_029821885.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 89.27% (automated estimate: 92.5%)
• Contamination: 3.34% (automated estimate: 1.9%)
• Quality: 72.57 (automated estimate: 83.0)

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 46.0%) (automated estimate: 1)
• 0 23S rRNAs
• tRNAs for 18 amino acids (automated estimate: 20)

Sequencing depth

11.25 ×

Source

• BioSample: SAMN26807186

Other features

• G+C Content: 65.54% (automated estimate: 65.54%)
• Coding Density: 89.23%
• Codon Table: 11
• N50: 12,416 bp
• Contigs: 444
• Largest Contig: 50,067 bp
• Assembly Length: 3,794,735 bp
• Ambiguous Assembly Fraction: 0.0045%

Submitter comments

CheckM v1.0.11 was used to determine MAG completeness and contamination. Barrnap v0.7 was used to extract 16S rRNA gene sequences from the MAG and assess sequence completion. G/C content was calculated as a ratio of the entire genome. Assessed tRNAs with tRNAscan-SE v.2.0.12 and counted only distinct, standard tRNA.

Automated checks

Complete