BioSample Accession(s)

SAMN10593547, SRS9239307

strain

Khr17

collection_date

2017-03

INSDC secondary accession

SRS9239307

NCBI submission package

Microbe.1.0

identified_by

Vasil A. Gaisin and Vladimir M. Gorlenko

organism

Candidatus Chloroploca sp. Khr17

geo_loc_name

Russia: Kandalaksha Gulf, Lake Bolshye Khruslomeny

collected_by

Lunina O.N.

sample_type

mixed culture

isolation_source

enrichment culture inoculated with surface sediment from lake

BioSampleModel

Microbe, viral or environmental

ENA-FIRST-PUBLIC

2018-12-14

ENA-LAST-UPDATE

2021-06-18

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX11181789" alias="Khr17" center_name="SUB9878742" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX11181789</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB9878742">Khr17</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>SRA of Candidatus Chloroploca arctica Khr17</TITLE>
  <STUDY_REF accession="SRP324668">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP324668</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA510041</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>The libraries were constructed with the NEBNext DNA library  prep reagent set for Illumina,  according to the protocol for the kit</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS9239307">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS9239307</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN10593547</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Khr17</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS9239307</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1248034</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX11181789&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX11181789&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>