Genome sc|0000370

Genomics

Accession

NCBI Assembly:GCA_029821875.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 90.59%
• Contamination: 4.01%
• Quality: 70.54

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 1 23S rRNA (up to 68.0%)
• tRNAs for 20 amino acids

Sequencing depth

20.529 ×

Source

• BioSample: SAMN20205124

Other features

• G+C Content: 65.4%
• Coding Density: 88.95%
• Codon Table: 11
• N50: 105,422 bp
• Contigs: 103
• Largest Contig: 341,731 bp
• Assembly Length: 4,312,816 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

CheckM v1.0.11 was used to determine MAG completeness and contamination. Barrnap v0.7 was used to extract 16S rRNA gene sequences from the MAG and assess sequence completion. G/C content was calculated as a ratio of the entire genome. Assessed tRNAs with tRNAscan-SE v.2.0.12 and counted only distinct, standard tRNA.

Automated checks

Complete

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Last modified 11 months ago