Genome sc|0000374

Genomics

Accession

NCBI Assembly:GCA_024650005.1

Type

Enrichment Genome

Estimated Quality Metrics

• Completeness: 98.28% (automated estimate: 100.0%)
• Contamination: 0.93% (automated estimate: 3.8%)
• Quality: 93.61 (automated estimate: 81.0)

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%) (automated estimate: 1)
• 1 23S rRNA (up to 100.0%) (automated estimate: 1)
• tRNAs for 18 amino acids (automated estimate: 19)

Sequencing depth

200.0 ×

Source

• BioSample: SAMN30076288

Other features

• G+C Content: 38.1% (automated estimate: 38.13%)
• Coding Density: 84.54%
• Codon Table: 11
• N50: 2,152,501 bp
• Contigs: 1
• Largest Contig: 2,152,501 bp
• Assembly Length: 2,152,501 bp
• Ambiguous Assembly Fraction: 0.0046%

Submitter comments

Completeness and contamination were evaluated using CheckM (Parks et al., 2015).
Annotation were performed by PGAP (Tatusova et al., 2016).
Number of standard amino acids for which tRNA elements were detected was determine by tRNAscan-SE (Lowe and Eddy, 1997).

Automated checks

Complete

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Last modified 11 months ago