Genome sc|0000377

Genomics

Accession

NCBI Assembly:GCA_002011035.2

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 100.0%
• Contamination: 0.93%
• Quality: 95.35

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 78.4%)
• 2 23S rRNAs (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

382.2 ×

Source

• BioSample: SAMN06226328

Other features

• G+C Content: 51.85%
• Coding Density: 89.12%
• Codon Table: 11
• N50: 535,545 bp
• Contigs: 3
• Largest Contig: 731,052 bp
• Assembly Length: 1,747,726 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

CheckM was used for completeness, contamination, and other genome features.
In Table S2 of (Adam et al., 2022), the number of 16S, 23S, and 5S rRNAs, tRNAs, and stop codons was estimated manually from the Prokka output that was run to predict Open Reading Frames. Thus, we will defer to the automated check for those. We have only updated our (higher than the automated check) fraction of the most complete 16S rRNA gene fragment.

Automated checks

Complete

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Last modified 11 months ago