Genome sc|0000383


Database

INSDC Nucleotide

Accession

CAKNWM010000001,CAKNWM010000002,CAKNWM010000003

Genomics

Accession
INSDC Nucleotide:CAKNWM010000001CAKNWM010000002CAKNWM010000003
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
116.0 ×
Source
Other features
  • G+C Content: 57.0%
  • Coding Density: 92.15%
  • Codon Table: 11
  • N50: 9,582,304 bp
  • Contigs: 3
  • Largest Contig: 9,582,304 bp
  • Assembly Length: 9,731,462 bp
  • Ambiguous Assembly Fraction: 0.001%
Submitter comments
The quality of the MAG was determined by inspection of the long-read-based (PacBio HiFi) chromosome-level assembly with over 100X coverage. The assembly is composed of a complete linear chromosome (one 9.6 Mb scaffold) with a placed but unresolved two copies 70kb repeat (the two remaining scaffolds). This assembly is corroborated by multiple, independent short-read reconstruction of MAGs from the same species. We note that traditional single-copy universal maker genes report high contamination levels (>10%) but these represent biological signal, as shown with the order-wide duplication of these genes (see https://www.nature.com/articles/s41586-022-04862-3/figures/10).
Automated checks
Complete

Last modified 11 months ago


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