SeqCode Registry
cognitis nomina
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Genomes
sc|0000387
JSON
Genome sc|0000387
Name
“Pseudoplanktomarina atlantica”
Database
NCBI Assembly
Accession
GCA_951542575.1
Genomics
Accession
NCBI Assembly:
GCA_951542575.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
89.94%
Contamination:
1.02%
Quality:
84.84
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 17 amino acids
Sequencing depth
30.0 ×
Source
BioSample: SAMN07136937
Other features
G+C Content:
42.0%
Coding Density:
91.08%
Codon Table:
11
N50:
39,894 bp
Contigs:
157
Largest Contig:
127,109 bp
Assembly Length:
2,601,395 bp
Ambiguous Assembly Fraction:
0.19%
Automated checks
Complete
Last modified
6 months ago
Sample Metadata
BioSample entries
BioSample: SAMN07136937
Date
Collection Date:
2010-10-27
Location
Lat Lon:
40.06269 S 5.52721 E
Toponym
Geo Loc Name:
Atlantic Ocean
Environment
Env Material:
water
Env Biome:
ocean_biome
Other
Depth:
81.4m
Package
Ncbi Submission Package:
MIMS.me.water.5.0
Biosamplemodel:
MIGS/MIMS/MIMARKS.water
All retrieved samples
SAMN07136937
: MIMS Environmental/Metagenome sample from marine metagenome
Metadata retrieved
7 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN07136937
×
Keywords: GSC:MIxS;MIMS:5.0
collection_date
2010-10-27
env_feature
ocean
INSDC secondary accession
SRS2329434
cruise_id
D357
organism
marine metagenome
bottle_id
237535
geotraces_section
GA10
NCBI submission package
MIMS.me.water.5.0
depth
81.4m
env_material
water
geo_loc_name
Atlantic Ocean
env_biome
ocean_biome
lat_lon
40.06269 S 5.52721 E
cruise_station
5
BioSampleModel
MIGS/MIMS/MIMARKS.water
ENA-FIRST-PUBLIC
2018-05-01
ENA-LAST-UPDATE
2019-06-20
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