JSON

Genome sc|0000387

Name

“Pseudoplanktomarina atlantica”

Database

NCBI Assembly

Accession

GCA_951542575.1

Genomics

Accession
NCBI Assembly:GCA_951542575.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 89.94%
  • Contamination: 1.02%
  • Quality: 84.84
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 17 amino acids
Sequencing depth
30.0 ×
Source
Other features
  • G+C Content: 42.0%
  • Coding Density: 91.08%
  • Codon Table: 11
  • N50: 39,894 bp
  • Contigs: 157
  • Largest Contig: 127,109 bp
  • Assembly Length: 2,601,395 bp
  • Ambiguous Assembly Fraction: 0.19%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2010-10-27
Location
Lat Lon: 40.06269 S 5.52721 E
Toponym
Geo Loc Name: Atlantic Ocean
Environment
Env Material: water
Env Biome: ocean_biome
Other
Depth: 81.4m
Package
Ncbi Submission Package: MIMS.me.water.5.0
Biosamplemodel: MIGS/MIMS/MIMARKS.water
All retrieved samples
Metadata retrieved about 1 month ago


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