Keywords: GSC:MIxS;MIMS:6.0

BioSample Accession(s)

SAMN12856802, SRS5443145

Site

MC885

collection_date

2016-09-30

depth (m)

625

INSDC secondary accession

SRS5443145

organism

coral metagenome

env_broad_scale

deep-sea coral community

env_local_scale

deep-sea coral community

colony_name

S3-14

NCBI submission package

MIMS.me.host-associated.6.0

Vial

16_661

host

Callogorgia

geo_loc_name

USA: Gulf of Mexico

Sample_ID_from_cruise

OI2016.215

env_medium

seawater

lat_lon

28.064 N 89.718 W

isolation_source

deep-sea coral community colony S3-14

BioSampleModel

MIGS/MIMS/MIMARKS.host-associated

ENA-FIRST-PUBLIC

2019-12-21

ENA-LAST-UPDATE

2023-04-11

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX6913168" alias="3594_A" center_name="SUB6351569" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX6913168</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB6351569">3594_A</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Metagenome of Callogorgia delta 16661 MC885 S3-14</TITLE>
  <STUDY_REF accession="SRP223392">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP223392</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA574146</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>whole genome sequencing with only 150bp paired-end reads</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS5443145">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS5443145</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN12856802</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>3594_A</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS5443145</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA968972</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX6913168&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX6913168&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX6911441" alias="2813_C" center_name="SUB6351280" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX6911441</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB6351280">2813_C</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Metagenome of Callogorgia delta 16661 MC885 S3-14</TITLE>
  <STUDY_REF accession="SRP223392">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP223392</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA574146</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>whole genome sequencing with only 150bp paired-end reads</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS5443145">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS5443145</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN12856802</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>2813_C</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS5443145</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA968801</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX6911441&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX6911441&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>