SeqCode Registry
cognitis nomina
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Genomes
sc|0000042
JSON
Genome sc|0000042
Database
NCBI Assembly
Accession
GCA_020687165.1
Genomics
Accession
NCBI Assembly:
GCA_020687165.1
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
98.1%
Contamination:
1.9%
Quality:
88.6
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 50.0%)
tRNAs for 20 amino acids
Sequencing depth
92.0 ×
Source
BioSample: SAMN22081893
Other features
G+C Content:
52.73%
Coding Density:
88.14%
Codon Table:
11
N50:
209,253 bp
Contigs:
37
Largest Contig:
543,757 bp
Assembly Length:
2,853,755 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2020-11-23
Location
Lat Lon:
50.776920 N 6.043417 E
Toponym
Geo Loc Name:
Germany: Aachen
Environment
Isolation Source:
feces
Env Broad Scale:
Human gut microbiome
Env Local Scale:
Human gut
Env Medium:
Feces
Other
Host:
Homo sapiens
Rel To Oxygen:
anaerobe
Package
Ncbi Submission Package:
MIGS.ba.human-gut.6.0
Biosamplemodel:
MIGS/MIMS/MIMARKS.human-gut
All retrieved samples
SAMN22081893
: Genome of pure isolates
Metadata retrieved
9 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN22081893
×
Keywords: GSC:MIxS;MIGS:6.0
strain
CLA-AA-H250
health_state
Healthy
isol_growth_condt
see SCD paper
ref_biomaterial
see SCD paper
type-material
type strain of Hominenteromicrobium mulieris
rel_to_oxygen
anaerobe
organism
Hominenteromicrobium mulieris
collection date
2020-11-23
isolation source
feces
env_broad_scale
Human gut microbiome
geo loc name
Germany: Aachen
env_local_scale
Human gut
host sex
female
host body mass index
22.5
NCBI submission package
MIGS.ba.human-gut.6.0
lat lon
50.776920 N 6.043417 E
host
Homo sapiens
num_replicons
1
host age
36
env_medium
Feces
BioSampleModel
MIGS/MIMS/MIMARKS.human-gut
ENA-FIRST-PUBLIC
2021-10-06
ENA-LAST-UPDATE
2023-09-03
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