Genome sc|0000431


Database

NCBI Assembly

Accession

GCA_030378065.1

Genomics

Accession
NCBI Assembly:GCA_030378065.1
Type
Single-Cell Amplified Genome (SAG)
Estimated Quality Metrics
  • Completeness: 98.0%
  • Contamination: 0.0%
  • Quality: 98.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
192.0 ×
Source
Other features
  • G+C Content: 43.0%
  • Coding Density: 88.66%
  • Codon Table: 11
  • N50: 67,678 bp
  • Contigs: 115
  • Largest Contig: 177,457 bp
  • Assembly Length: 4,408,079 bp
  • Ambiguous Assembly Fraction: 0.025%
Submitter comments
The assembly of the genome was carried out using the SPAdes v3.15.1 program. Prokka v1.14.6 program was used for gene annotation. Furthermore, the NCBI Prokaryotic Genome Annotation Pipeline (PGAP) is in the NCBI database. Completion and contamination were estimated by the CheckM v.1.2.1 program and MiGA project. The completion from checkM was 98% (0% contamination), while MiGA project informed 100% of completion (4.3% contamination). This genome assembly is proposed to replace  the genome and name "Candidatus Venteria ishoeyi",  as the novel type, having better quality than the former "Candidatus" genome (https://lpsn.dsmz.de/species/venteria-ishoeyi) and Assembly = GCA_900099115.2.
Automated checks
Complete

Last modified 11 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license