Genome sc|0000432

Genomics

Accession

NCBI Assembly:GCA_030378005.1

Type

Single-Cell Amplified Genome (SAG)

Estimated Quality Metrics

• Completeness: 93.0%
• Contamination: 0.0%
• Quality: 93.0

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

83.0 ×

Source

• BioSample: SAMN35709910

Other features

• G+C Content: 43.0%
• Coding Density: 85.08%
• Codon Table: 11
• N50: 50,842 bp
• Contigs: 197
• Largest Contig: 200,153 bp
• Assembly Length: 6,612,376 bp
• Ambiguous Assembly Fraction: 0.013%

Submitter comments

The assembly of the genome was carried out using the SPAdes v3.15.1 program. Prokka v1.14.6 program was used for genome annotation (identify tRNA and rRNA genes). Furthermore, the NCBI Prokaryotic Genome Annotation Pipeline (PGAP) is in the NCBI database. Completion and contamination were estimated by the CheckM v.1.2.1 program and MiGA project. The completion from c´CheckM was 93% (0% contamination), while MiGA project informed 100% (8% contamination). This genome is proposed as the type for the new species  Desulfofilum molinae. 

Automated checks

Complete

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Last modified 11 months ago